Amino-modified Nucleosides
5-(Azidomethyl)-2'-deoxyuridine
Quick view. A 2'-deoxyuridine derivative bearing an azidomethyl substituent at uracil C5. CAS 59090-48-1. Catalog target purity: ≥98%. Availability: Inquiry only — contact BX Lab to confirm current availability.
Product profile
5-(Azidomethyl)-2'-deoxyuridine is classified as c5-azidomethyl pyrimidine 2'-deoxyribonucleoside (Formula C10H13N5O5; molecular weight 283.24 g/mol).
5-(Azidomethyl)-2'-deoxyuridine — Reported in primary literature as a free nucleoside prepared by azide substitution of a protected 5-chloromethyl-2'-deoxyuridine precursor.
For 5-(Azidomethyl)-2'-deoxyuridine, copper-catalyzed, copper-free or inverse-electron-demand click conditions can affect sensitive oligonucleotides differently; residual metal, solvent and purification strategy should be controlled.
Names and search terms
Confirmed or normalized name variants
- 5-AmdU
- 5-(Azidomethyl)-1-(2-deoxypentofuranosyl)-4-hydroxypyrimidin-2(1H)-one
Useful catalog search terms
- 59090-48-1
- 2181CB
Physicochemical data
| InChI | InChI=1S/C10H13N5O5/c11-14-12-2-5-3-15(10(19)13-9(5)18)8-1-6(17)7(4-16)20-8/h3,6-8,16-17H,1-2,4H2,(H,13,18,19) |
|---|---|
| InChIKey | JKSAKMHLWMCADM-UHFFFAOYSA-N |
| SMILES | [N-]=[N+]=NCc1cn(C2CC(O)C(CO)O2)c(=O)nc1O |
Release documentation
The current specification defines the analytical method and acceptance criteria; the released lot result is reported on the CoA.
Additional HPLC, MS or NMR documentation can be agreed during technical review where available.
Product-specific evaluation notes
Potential advantages
- Click-compatible handles separate oligonucleotide synthesis from late-stage labeling, which helps screen multiple payloads from a common intermediate.
- Reactive handles make the product adaptable across dye-labeling, surface-coupling and ligand-conjugation workflows.
Method limitations
- Copper-catalyzed, copper-free or inverse-electron-demand click conditions can affect sensitive oligonucleotides differently; residual metal, solvent and purification strategy should be controlled.
- Functional handles may require orthogonal protection, pH control and rapid purification to avoid hydrolysis, oxidation or cross-reaction.
These points describe 5-(Azidomethyl)-2'-deoxyuridine or its named chemical feature. Broader product-family guidance is maintained on the category page.
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Frequently asked questions
Can the package size for 5-(Azidomethyl)-2'-deoxyuridine be customized?
Yes. Share the initial quantity, expected future scale, delivery timeline and packaging preference for review.
What information should be included in a quote request?
Quote catalog number BX-AMN-0223 and CAS 59090-48-1, the intended research workflow, required quantity and any additional HPLC, MS or NMR documentation needed.
Product-relevant literature
The publications below discuss named chemistry or a structural feature represented by this product. They provide scientific context only and are not a BX Lab lot specification or product-performance claim.
Feature and workflow background
These publications discuss a broader chemistry feature or workflow identified from the catalog name or product family. They are background reading only, not evidence for the exact BX Lab product, supplied form, lot specification, availability or performance.
Technology platforms
Catalog-derived platform membership for navigating related chemistry and verifiable product sets.